User: Ponyo

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Ponyo0
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Posts by Ponyo

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Answer: A: No CNVs detected. Try changing "normalization", "priorImpact" or "thresholds".
... I find this new error message only with refSeqName=paste0("scaffolds_",751:760): command: bamDataRanges <- getReadCountsFromBAM(BAMFiles,mode="paired",refSeqName=paste0("scaffolds_",751:760),WL=2000) error: Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") :   solving ...
written 2.7 years ago by Ponyo0
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Answer: A: No CNVs detected. Try changing "normalization", "priorImpact" or "thresholds".
... Hello Günter, When I run cn.MOPS on all scaffolds at once using the following command: bamDataRanges <- getReadCountsFromBAM(BAMFiles,mode="paired",refSeqName=paste0("scaffolds_",501:1000),WL=2000) I found new error message: Identified the following reference sequences:  scaffolds_0,scaffolds ...
written 2.7 years ago by Ponyo0
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No CNVs detected. Try changing "normalization", "priorImpact" or "thresholds".
... Dear Günter, Rencently, I am trying to analyze plant genome CNVs across multiple samples, and notice that your cn.MOPS is very suitable for this. We focused on a de novo plant genome, which has many scaffolds (with no chromosome-level sequences). Unfortunately we got some error message when running ...
cn.mops no cnvs detected. try changing "normalization" "priorimpact" or "thresholds". written 2.7 years ago by Ponyo0 • updated 2.7 years ago by Günter Klambauer540

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