User: Mark

gravatar for Mark
Mark10
Reputation:
10
Status:
New User
Location:
Imperial College London
Last seen:
2 years, 5 months ago
Joined:
2 years, 7 months ago
Email:
m*******@ic.ac.uk

Posts by Mark

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Comment: C: Error in TxDb mm10 coordinates?
... Ah yeah, should have checked that. Thanks! ...
written 2.6 years ago by Mark10
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Error in TxDb mm10 coordinates?
... Hi,  The TxDb.Mmusculus.UCSC.mm10.knownGene package appears to be giving me some strange co-ordinates for certain genes, making them huge, e.g. this microRNA which stretches 35 Mb according to the txdb package but 66 bp according to UCSC. Any suggestions/something I'm overlooking? library(TxDb.Mm ...
txdb txdb.mmusculus.ucsc.mm10.knowngene written 2.6 years ago by Mark10 • updated 2.6 years ago by James W. MacDonald50k
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SC3 with latent variable corrected counts
... I was just wondering if it's valid to perform SC3 clustering on latent variable normalised counts obtained for example from RUVSeq's RUVg or similar methods?   Thanks a lot, Mark ...
single cell sc3 written 2.7 years ago by Mark10 • updated 2.7 years ago by Vladimir Kiselev150

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