User: julien.bryois

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Posts by julien.bryois

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DiffBind - Difference in counting methodology when summits option in dba.count is on?
... Hi, I wanted to quantify a new sample at peak coordinates identified previously (using the summit option in dba.count). I noticed that the peak quantification using the previously identified coordinates were very different from the peak quantification that I obtained with the summit option in dba.c ...
diffbind dba.count summits written 19 months ago by julien.bryois0 • updated 18 months ago by Rory Stark2.5k
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DiffBind - dba.count - Reads overlapping multiple peaks question
... Dear Rory, I am currently using DiffBind to detect differential chromatin accessibility using ATAC-seq data. We are testing a few different ways of doing this analysis and I have a question on the behaviour of dba.count for one of the options. This option is to create non-overlapping sliding windo ...
diffbind written 20 months ago by julien.bryois0 • updated 20 months ago by Gord Brown570

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