User: ahmed.asadik

gravatar for ahmed.asadik
Reputation:
0
Status:
New User
Location:
Germany, DKFZ
Last seen:
1 day, 3 hours ago
Joined:
11 months, 1 week ago
Email:
a***********@gmail.com

Posts by ahmed.asadik

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answer
66
views
1
answer
Retrieving corrected matrix after linear model adjustment
... Dear All, I am using the limma package for differential expression analysis. In my datasets there are strong confounding effects due to both technical variation and biological contamination of the tumor cells with infiltrating cells and stroma. I would like to cluster my patient samples after remo ...
limma sva written 20 days ago by ahmed.asadik0 • updated 20 days ago by James W. MacDonald44k
0
votes
2
answers
224
views
2
answers
Comment: C: Discrepancy in the output of decideTests (total not equal to sum of up/down gene
... Dear Gordon and Aaron, Thank you very much for your replies. This seems to solve the issue, but I have another question. Which genes should I use to run GSEA. Should I use the genes after the option include="both", or include=c("up", "down")? because the total number of genes from both options are ...
written 11 months ago by ahmed.asadik0
3
votes
2
answers
224
views
2
answers
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
... Dear All, I am having some strange experience with the function decideTests. When I compare between the total number of genes between my three groups and the the sum of the corresponding up and down genes the results are different. The sum is either larger than or smaller than the total. Am I doi ...
limma decidetests written 11 months ago by ahmed.asadik0 • updated 11 months ago by Gordon Smyth31k

Latest awards to ahmed.asadik

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 211 users visited in the last hour