User: ahmed.asadik

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Posts by ahmed.asadik

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Comment: C: Discrepancy in the output of decideTests (total not equal to sum of up/down gene
... Dear Gordon and Aaron, Thank you very much for your replies. This seems to solve the issue, but I have another question. Which genes should I use to run GSEA. Should I use the genes after the option include="both", or include=c("up", "down")? because the total number of genes from both options are ...
written 9 months ago by ahmed.asadik0
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Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
... Dear All, I am having some strange experience with the function decideTests. When I compare between the total number of genes between my three groups and the the sum of the corresponding up and down genes the results are different. The sum is either larger than or smaller than the total. Am I doi ...
limma decidetests written 9 months ago by ahmed.asadik0 • updated 9 months ago by Gordon Smyth31k

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