User: wesley.cai

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wesley.cai0
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Posts by wesley.cai

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Diffbind - "dba.report" showing values with less significant figures?
... Hi, I have been using diffbind for a while now, and I use this code to generate a results file: d_all.DB <- dba.report(d_all, contrast=1, method=DBA_DESEQ2, th=1, DataType=DBA_DATA_FRAME) write.table(d_all.DB, "results.txt", sep="\t", eol="\n", quote=FALSE, row.names=FALSE) I used to get 8+ s ...
diffbind dba.report written 2.4 years ago by wesley.cai0 • updated 2.4 years ago by Rory Stark2.9k
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Comment: C: Diffbind - What exactly is a "consensus" peak set?
... Ah, I see. Thanks for the response!  -Wes ...
written 3.0 years ago by wesley.cai0
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Comment: C: Diffbind - What exactly is a "consensus" peak set?
... This makes a lot of sense, thank you for the insight! -Wes ...
written 3.0 years ago by wesley.cai0
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Comment: C: Diffbind - What exactly is a "consensus" peak set?
... I see, thanks Gord. I also welcome any advice from you brilliant folks. That's the first I've heard of that, so I'll give it a go on my data.  This is out of the scope of Diffbind, but do you personally prefer obtaining significant differences through Diffbind without the IDR pipeline? Or do you ac ...
written 3.0 years ago by wesley.cai0
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Diffbind - What exactly is a "consensus" peak set?
... Hi, I have a question about the definition of consensus peak set. I can think of two options: A) One single peak set from adding and merging multiple peak sets. akin to: cat 1.bed 2.bed | bedtools merge -stdin > consensus.bed B) A "pooled" peak set consisting of all the peaks from the two input ...
diffbind peakset written 3.0 years ago by wesley.cai0 • updated 3.0 years ago by Gord Brown590

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