User: Camila Orellana

Reputation:
10
Status:
New User
Location:
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland
Last seen:
2 years, 9 months ago
Joined:
3 years ago
Email:
c*********@uq.edu.au

Posts by Camila Orellana

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Which is the best design matrix to compare a timecourse between two conditions?
... Thank you very much for your explanation!  ...
written 2.8 years ago by Camila Orellana10
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Comment: C: Which is the best design matrix to compare a timecourse between two conditions?
... Yes that is what I want to do, thank you very much! ...
written 2.8 years ago by Camila Orellana10
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Which is the best design matrix to compare a timecourse between two conditions?
... Hi, I am a bit confused with what design matrix to use to test for differential expression. I've used two examples of design matrix for time course analyzis with many time points of two conditions, and I get different results when using voom. For design1 I got 884 genes with adjusted p-value <0.0 ...
timecourse limma voom design matrix written 2.8 years ago by Camila Orellana10 • updated 2.8 years ago by Gordon Smyth39k
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Comment: C: Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray
... Hi Gordon,  I am a bit confused with what design matrix to use to test for differential expression. I've seen two examples of design matrix for time course analyzis with many (15) time points of two conditions, and I get different results:  y <- DGEList(counts=counts) A <- aveLogCPM(y) y2 &l ...
written 2.8 years ago by Camila Orellana10 • updated 2.8 years ago by Gordon Smyth39k
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Answer: A: Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray
... Thank you very much! ...
written 3.0 years ago by Camila Orellana10
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
... Hi, I want to do a time course analyzis with many time points of two conditions but no replicates, following the section 9.6.2 of the Limma User’s Guide (https://www.bioconductor.org/packages/3.3/bioc/vignettes/limma/inst/doc/usersguide.pdf). However, this is for microarray data but my data is RNA- ...
timecourse limma edger voom without replicate written 3.0 years ago by Camila Orellana10

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