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User: mariamari693693

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Posts by mariamari693693

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Comment: C: normalizationFactors DESeq2 package
... @Micheal Love  great! thanks. I see. I am both learning how DESeq2 works and also just learned how methods/classes work :-) thanks a lot ...
written 15 months ago by mariamari6936930
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normalizationFactors DESeq2 package
... I am looking inside the DESeq2 code to learn how it works. I can't find any definition for the function "normalizationFactors". The reason is that when I run : normalizationFactors.DESeqDataSet <- function(object) { # Temporary hack for backward compatibility with "old" DESeqDataSet # obj ...
deseq2 tutorial written 15 months ago by mariamari6936930 • updated 15 months ago by Gordon Smyth36k
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Comment: C: convert DEseq2 R code to html
... I tried to convert to html, it was good but \code{\link{...}} were ignored ;( ...
written 22 months ago by mariamari6936930
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Comment: C: convert DEseq2 R code to html
... Hi, Thanks for your reply. Accually, I would like to convert the codes in DESeq2/R dirrectoy like core.R, ... ############################################################ # # DESeq2 organization of R files # # core.R ......... most of the statistical code (example call below) # methods.R ...... the ...
written 22 months ago by mariamari6936930
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convert DEseq2 R code to html
... I would like to convert R  codes  R codes in /DESeq2/R/  to HTML, but after conversion \code{\link{...}} are ignored. Would you please let me know I can convert them properly? ...
deseq2 written 22 months ago by mariamari6936930 • updated 22 months ago by Michael Love21k
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problem with makeGRangesListFromFeatureFragments
... Hi, I want to convet : myFile.txt ====== MotifName       strand  targetName      targetStart     targetEnd GATA1   *       chr15,chr7,chrX,chr9,chr2,chr18,chr3,chr5,chr12,chr1    48847536,127527717,102379250,140094948,113485701,28285784,119187237,178110784,105353030,1206548448848140,127528321,10 ...
iranges genomicranges grangeslist irangeslist written 2.2 years ago by mariamari6936930 • updated 2.1 years ago by shepherl ♦♦ 1.1k

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