User: BioinfStudent

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Posts by BioinfStudent

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Comment: C: DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
... Thank you for the feedback- I will look into running this program next time if I am unable to get summarizeOverlaps to work with my data. I appreciate the input! ...
written 11 months ago by BioinfStudent0
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Comment: C: DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
... The operating system is CentOS 6. Admin is in the process of upgrading the system to CentOS 7. Here is what was given after including sessionInfo(): > sessionInfo() R version 3.2.2 (2015-08-14) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS release 6.8 (Final) locale: [1] LC_CTYPE ...
written 11 months ago by BioinfStudent0
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Comment: C: DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
... I can, and I will do so as soon as I can. We are going through some issues with our firewall but when things are running smoothly, I'll post! ...
written 11 months ago by BioinfStudent0
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Comment: C: DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
... Addn: The remote desktop I am using has 32 GB RAM. ...
written 11 months ago by BioinfStudent0
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DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
... Hey everyone, I'm having an issue with running DESeq2 and hoping someone can help or give some advice. I'm very new to this and don't know a lot about CPU memory/parallel or series program running, etc. It's similar to a question posted 2 years ago @ https://support.bioconductor.org/p/63875/ . Sorry ...
genomicfeatures genomicalignments bioclite bioconductor summarizeoverlaps written 11 months ago by BioinfStudent0 • updated 11 months ago by Michael Love14k

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