User: jhnwphillips

gravatar for jhnwphillips
Reputation:
0
Status:
New User
Last seen:
21 hours ago
Joined:
2 years, 8 months ago
Email:
j***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by jhnwphillips

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answer
98
views
1
answers
Comment: C: Identifying cell line-independent DEG in a time series (DESeq2)
... Thanks again, Michael. Posting correction here for posterity: ``` #Corrected design dds <- DESeqDataSetFromMatrix(countData=countdata, colData=coldata, design=~cell_line + time_point) #Perform LRT to identify genes with consistent profile ddsTC <- DESeq(dds, test="LRT", reduced = ~cell_line) ...
written 18 days ago by jhnwphillips0
0
votes
1
answer
98
views
1
answers
Comment: C: Identifying cell line-independent DEG in a time series (DESeq2)
... This appears to have worked! Thanks so much. Code follows (please double check) in case anyone else has this issue. ``` #Corrected design dds <- DESeqDataSetFromMatrix(countData=countdata, colData=coldata, design=~cell_line + time_point) dds <- DESeq(dds) #Perform LRT to identify genes with ...
written 18 days ago by jhnwphillips0
2
votes
1
answer
98
views
1
answer
Identifying cell line-independent DEG in a time series (DESeq2)
... Hello there. I would like to identify the cell line-independent differentially expressed genes in a time series experiment, i.e. those genes that respond similarly to the stimulus regardless of cell line background. This is the opposite scenario from the one described in the DESeq2 documentation fo ...
deseq2 written 18 days ago by jhnwphillips0 • updated 18 days ago by Michael Love24k

Latest awards to jhnwphillips

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 332 users visited in the last hour