User: romsdahl

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romsdahl0
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Posts by romsdahl

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RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
... I am analyzing RNA-seq data using a hisat2 --> htseq-count --> edgeR pipeline. To do this, I am feeding CPM values generated by htseq-count into edgeR, which produces a "toptags" table, or list of differentially expressed genes with their associated logFC, logCPM, and p-value. I have noticed t ...
rnaseq edger htseqcounts written 2.3 years ago by romsdahl0 • updated 2.3 years ago by Aaron Lun23k

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