User: Jakob Willforss

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@JakobWil
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2 years, 11 months ago
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Posts by Jakob Willforss

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Answer: A: Handling < 1 values in NormalyzerDE
... The reason values below 1 leads to issues in NormalyzerDE is that they after log transformation will become negative. If these values are rare you could filter out these entries by doing the following. I am using the package `readr` for loading and writing the updated data - it could also be done w ...
written 11 days ago by Jakob Willforss0
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Handling < 1 values in NormalyzerDE
... Dear developer, I have problem when running NormalyzerDE as values below 1 leads to warnings that this will cause negative values during processing. But my data is not log transform, so I don't want to run using the "noLogTransform=TRUE" option assigned - I want NormalyzerDE to log-transform my dat ...
normalyzerde written 11 days ago by Jakob Willforss0
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Answer: A: Running dataset with few datapoints in NormalyzerDE
... Dear user, NormalyzerDE is designed for normally distributed (i.e. proteomics, metabolomics, microarray) omics-datasets which normally contains hundreds- or thousands- of datapoints. Some of the normalizations and many of the performance measures will not be reliable for tiny datasets. With this s ...
written 8 months ago by Jakob Willforss0
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Running dataset with few datapoints in NormalyzerDE
... Question repeatedly asked in various forms: "Dear developer, I would like to use NormalyzerDE for a dataset containing less than 15 datapoints. Is this possible, and what are the limitations?" ...
normalyzerde written 8 months ago by Jakob Willforss0

Latest awards to Jakob Willforss

Autobiographer 8 months ago, has more than 80 characters in the information field of the user's profile.
Scholar 3.0 years ago, created an answer that has been accepted. For A: Running dataset with few datapoints in NormalyzerDE

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