User: lwang.daniel

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lwang.daniel10
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10 months, 1 week ago
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10 months, 2 weeks ago
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l***********@gmail.com

Posts by lwang.daniel

<prev • 5 results • page 1 of 1 • next >
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Comment: C: WGCNA error : Error in hclust
... Dear Peter: Thank you for your advice. I check the log(x+1) result. And the fpkm of four genes after this transform are all numeric data. Do you mind check my script and data? I can give it to you, if you do not mind. ...
written 10 months ago by lwang.daniel10
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Comment: C: WGCNA error : Error in hclust
... Dear Peter: Thank you for your hint. I do transfor the data by using log2(x+1). Is it not suitable for my data? Cause WGCNA suggests to do. Should I use the row fpkm to analyze the data? And Is there any differences between using raw fpkm and log2(x+1)? Thank you! ...
written 10 months ago by lwang.daniel10
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Comment: C: WGCNA error : Error in hclust
... Dear Peter:         Thank you for your suggestion.         I did find NA from result of adjacency(datExpr).                             ENSG00000184647.10_1 ENSG00000184650.10_2 ENSG00000000003.14_1         7.008855e-05                   NA ENSG00000000005.5_1          1.045386e-08               ...
written 10 months ago by lwang.daniel10
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Comment: C: WGCNA error : Error in hclust
... Dear Petter:        Thank you for your patient explanation.        I have filtered data already by using goodSamplesGenes, before co-expression network construction.        Do you have other suggestion?        Thank you!         ...
written 10 months ago by lwang.daniel10
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WGCNA error : Error in hclust
... Hello, I am using WGCNA to construct co-expression networks. Scripts: #!/usr/bin/Rscript getwd() workingDir = "." setwd(workingDir) library(WGCNA) options(stringsAsFactors = FALSE) enableWGCNAThreads() lnames = load(file ="dataInput.RData") lnames = load(file ="networkConstruction.RData") nGenes = ...
wgcna written 10 months ago by lwang.daniel10 • updated 10 months ago by Peter Langfelder1.3k

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