User: smajor

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smajor0
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Posts by smajor

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Answer: A: Simple Syntax Question
... I also want to add that I don't think my subsetting is working properly, so I fear that I will have a difficult tim looking at replicates within the same experiment. sampleNames(flowData) <- as.character(pData(flowData)[,"FILENAME"]) # Error in `[.data.frame`(pData(flowData), , "FILENAME") :  ...
written 2.7 years ago by smajor0
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Simple Syntax Question
... This is a simple question regarding the syntax of using the transformList. I loaded my data with a meta data file and transformed it. flowData <- read.flowSet(path = "170113 HTB1-CC503 AOvPI" , phenoData = "metaData4.txt", transformation = F) tData <- transform(flowDa ...
transform syntax transformlist written 2.7 years ago by smajor0
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Subsetting and Transforming
... Hello,  I'm working through the flowCore manual  "flowCore: data structures package for flow cytometry data, N. Le Meur F. Hahne B. Ellis P. Haaland, December 1, 2016"  In section 4.3 Subsetting it instructs to give the code  > morphGate <- norm2Filter("FSC-H", "SSC-H", filterId="Morpholo ...
flowcore subsetting gate written 2.7 years ago by smajor0 • updated 2.7 years ago by Martin Morgan ♦♦ 23k
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Loading FCS files
... Hello, I am running a fairly extensive flow cytometry experiment. I am very new to Rstudio and I'm having a difficult time to loading my data so I can begin my analyses. I used a partial 96-well plate to run my experiment. I was able to export each wells data as a .fcs file. None of my samples have ...
bioconductor flow cytometry fcs phenodata loading data written 2.7 years ago by smajor0 • updated 2.7 years ago by SamGG190

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