User: zuupcat

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zuupcat0
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Posts by zuupcat

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Answer: A: BSmooth: mclapply error when smoothing using BSmooth
... I was able to solve the problem. Apparently there was something wrong with the transition from my list of bed files to the bsseq object, resulting in a messed up ordering of the CpG positions. This resulted in a function abort when calling all(diff(pos) > 0). I don't really know what the problem ...
written 2.5 years ago by zuupcat0
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Comment: C: BSmooth: mclapply error when smoothing using BSmooth
... 4 samples. Reducing the number of samples however also does not help (at least not when subsetting the bsseq object directly).  Edit: Or is there a way to get more information about this error? I tried to manually load the BSmooth function and run it line by line, but unfortunately I also run into ...
written 2.5 years ago by zuupcat0
1
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answers
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BSmooth: mclapply error when smoothing using BSmooth
... Hey everybody, I'm running into an error when trying to smooth my BSseq object using BSmooth(). Strangely enough the error does not occur when I reduce the number of CpG loci to 165428 or below (yes exactly this number..). Even stranger is, that I cannot reproduce the error using the BS.chr22 cance ...
bsseq bsmooth written 2.5 years ago by zuupcat0

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Scholar 2.5 years ago, created an answer that has been accepted. For A: BSmooth: mclapply error when smoothing using BSmooth

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