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2
votes
10
replies
3.3k
views
DESeq2 results export padj sorted
deseq2 deseq differential binding analysis
updated 6.3 years ago by 41k • written 6.3 years ago by ▴ 60
0
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1
reply
1.8k
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Comment: C: Matrix not full rank - DESeq2
6.3 years ago rbronste ▴ 60
2
votes
4
replies
1.8k
views
Matrix not full rank - DESeq2
deseq2 model matrix not full rank model.matrix deseq differential binding analysis
updated 6.3 years ago by ★ 3.7k • written 6.3 years ago by ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: Matrix not full rank - DESeq2
6.3 years ago rbronste ▴ 60
0
votes
1
reply
5.4k
views
Comment: C: Intergenic coordinates with Genomic Feaures
6.3 years ago rbronste ▴ 60
1
vote
1
reply
1.5k
views
Filtering a BED file according to genomic annotation
bed files bedtools filtering chipseq
updated 6.3 years ago by ★ 28k • written 6.3 years ago by ▴ 60
1
vote
1
reply
2.4k
views
Comment: C: SummarizedExperiment object from GEOquery obtained GSE
6.3 years ago rbronste ▴ 60
0
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1
reply
2.4k
views
Comment: C: SummarizedExperiment object from GEOquery obtained GSE
6.3 years ago rbronste ▴ 60
10
votes
7
replies
2.4k
views
SummarizedExperiment object from GEOquery obtained GSE
geoquery summarizedexperiment GEO matrix
updated 6.3 years ago by 21k • written 6.3 years ago by ▴ 60
1
vote
0
replies
2.4k
views
Comment: C: SummarizedExperiment object from GEOquery obtained GSE
6.3 years ago rbronste ▴ 60
0
votes
1
reply
2.2k
views
Comment: C: ChIPSeeker enrichPeakOverlap external dataset downloads
6.3 years ago rbronste ▴ 60
0
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1
reply
2.2k
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Comment: C: ChIPSeeker enrichPeakOverlap external dataset downloads
6.3 years ago rbronste ▴ 60
5
votes
7
replies
2.2k
views
ChIPSeeker enrichPeakOverlap external dataset downloads
chipseeker chipseq chip
updated 6.3 years ago by ★ 1.2k • written 6.3 years ago by ▴ 60
0
votes
0
replies
2.2k
views
Comment: C: ChIPSeeker enrichPeakOverlap external dataset downloads
6.3 years ago rbronste ▴ 60
0
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0
replies
1.3k
views
Comment: C: Packages employing RangedSummarizedExperiment objects
6.3 years ago rbronste ▴ 60
2
votes
2
replies
1.3k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment packages granges iranges
updated 6.3 years ago by ★ 28k • written 6.3 years ago by ▴ 60
0
votes
0
replies
1.2k
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Comment: C: Structure of DiffBind dba.count matrix equivalent to DESeqDataSetFromMatrix inpu
6.3 years ago rbronste ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: Mapping DESeq2 output back to chromosomal positions
6.3 years ago rbronste ▴ 60
0
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1
reply
1.3k
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Comment: C: Mapping DESeq2 output back to chromosomal positions
6.3 years ago rbronste ▴ 60
2
votes
5
replies
1.3k
views
Mapping DESeq2 output back to chromosomal positions
deseq2 deseq diffbind differential binding analysis
updated 6.3 years ago by 41k • written 6.3 years ago by ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: Mapping DESeq2 output back to chromosomal positions
6.3 years ago rbronste ▴ 60
4
votes
3
replies
1.2k
views
Opinions on DESeqDataSetFromMatrix rowSums minimum for ChIP and/or ATAC-seq
deseq2 atac-seq chipseq differential binding analysis
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 60
0
votes
0
replies
1.2k
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Comment: C: Opinions on DESeqDataSetFromMatrix rowSums minimum for ChIP and/or ATAC-seq
6.4 years ago rbronste ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: DESeq2 design subcategories
6.4 years ago rbronste ▴ 60
0
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0
replies
1.7k
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Comment: C: DESeq2 design subcategories
6.4 years ago rbronste ▴ 60
0
votes
2
replies
1.7k
views
Comment: C: DESeq2 design subcategories
6.4 years ago rbronste ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: DESeq2 design subcategories
6.4 years ago rbronste ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: DESeq2 design subcategories
6.4 years ago rbronste ▴ 60
0
votes
0
replies
1.7k
views
Comment: C: DESeq2 design subcategories
6.4 years ago rbronste ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: DESeq2 design subcategories
6.4 years ago rbronste ▴ 60
9
votes
17
replies
1.7k
views
DESeq2 design subcategories
deseq2 deseq differential binding analysis
updated 6.4 years ago by 41k • written 6.4 years ago by ▴ 60
3
votes
2
replies
2.0k
views
Rsamtools use for R version 3.4.1
rsamtools package installation samtools
updated 6.4 years ago by 65k • written 6.4 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Comment: C: Filtering DESeq2 result export along multiple lines
6.4 years ago rbronste ▴ 60
0
votes
1
reply
1.4k
views
Comment: C: Filtering DESeq2 result export along multiple lines
6.4 years ago rbronste ▴ 60
0
votes
1
reply
1.4k
views
Comment: C: Filtering DESeq2 result export along multiple lines
6.4 years ago rbronste ▴ 60
4
votes
7
replies
1.4k
views
Filtering DESeq2 result export along multiple lines
deseq2 differential binding analysis deseq
updated 6.4 years ago by 41k • written 6.4 years ago by ▴ 60
0
votes
0
replies
818
views
Comment: C: Cleaning up DiffBind counts in relation to chromosome map
6.4 years ago rbronste ▴ 60
2
votes
2
replies
818
views
Cleaning up DiffBind counts in relation to chromosome map
diffbind chipseq differential binding analysis
updated 6.4 years ago by ★ 5.1k • written 6.4 years ago by ▴ 60
0
votes
0
replies
966
views
Removing/combining specific annotation categories in ChIPSeeker plots/analysis
chipseeker chipseq annotation
6.4 years ago rbronste ▴ 60
0
votes
0
replies
4.4k
views
Comment: C: Unable to find an inherited method for function distanceToNearest for signature
6.4 years ago rbronste ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: Altering design following DESeqDataSetFromMatrix and DESeq
6.4 years ago rbronste ▴ 60
0
votes
1
reply
4.4k
views
Comment: C: Unable to find an inherited method for function distanceToNearest for signature
6.4 years ago rbronste ▴ 60
0
votes
5
replies
4.4k
views
Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich granges distancetonearest function dataframe
6.4 years ago rbronste ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: Altering design following DESeqDataSetFromMatrix and DESeq
6.4 years ago rbronste ▴ 60
1
vote
1
reply
753
views
Chipenrich expected fit line
chipenrich
updated 6.4 years ago by ▴ 140 • written 6.5 years ago by ▴ 60
0
votes
2
replies
1.3k
views
Comment: C: Altering design following DESeqDataSetFromMatrix and DESeq
6.4 years ago rbronste ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: Altering design following DESeqDataSetFromMatrix and DESeq
6.4 years ago rbronste ▴ 60
4
votes
7
replies
1.3k
views
Altering design following DESeqDataSetFromMatrix and DESeq
deseq2 differential binding analysis
updated 6.4 years ago by 41k • written 6.4 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Comment: C: Structure of DiffBind dba.count matrix equivalent to DESeqDataSetFromMatrix inpu
6.5 years ago rbronste ▴ 60
1
vote
3
replies
1.2k
views
Structure of DiffBind dba.count matrix equivalent to DESeqDataSetFromMatrix input?
deseq2 diffbind
updated 6.5 years ago by ★ 5.1k • written 6.5 years ago by ▴ 60
144 results • Page 2 of 3
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