User: kkadzi25
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C: Gene Expression Matrix (CPM)
... Thank you very much for your assistance.
...
written 2.7 years ago by
kkadzi25 • 0
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A: Gene Expression Matrix (CPM)
... This makes a lot more sense now, thank you very much Dr. Smyth. I understand that it'd be much better to obtain the raw read counts and follow the pipeline written in the article, but would you say that using https://www.bioconductor.org/help/workflows/RNAseq123/ and starting with the Data pre-proce ...
written 2.7 years ago by
kkadzi25 • 0
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C: Gene Expression Matrix (CPM)
... Thank you Gordon for such a quick reply. Yes, by CPM is mean counts-per-milion from the edgeR. We submitted the samples to the RNA-Seq facility and what we received was an excel spreadsheet titled: "Gene Expression Matrix (CPM)" with thousands of genes across 16 samples in 4 groups. I have tried to ...
written 2.7 years ago by
kkadzi25 • 0
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... Dear forum members :)
I'm a newb at R and bioinformatics so I am finding myself a little flustered by what to do now. I have obtained a gene expression matrix CPM normalized, with close to 15,000 genes and 16 total samples -> 4 samples in 4 groups. I have been trying to follow the pipelines dire ...
written 2.7 years ago by
kkadzi25 • 0
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