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User: kkadzi25

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kkadzi250
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Posts by kkadzi25

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Comment: C: Gene Expression Matrix (CPM)
... Thank you very much for your assistance. ...
written 2.0 years ago by kkadzi250
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Comment: A: Gene Expression Matrix (CPM)
... This makes a lot more sense now, thank you very much Dr. Smyth. I understand that it'd be much better to obtain the raw read counts and follow the pipeline written in the article, but would you say that using https://www.bioconductor.org/help/workflows/RNAseq123/ and starting with the Data pre-proce ...
written 2.0 years ago by kkadzi250
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Comment: C: Gene Expression Matrix (CPM)
... Thank you Gordon for such a quick reply. Yes, by CPM is mean counts-per-milion from the edgeR. We submitted the samples to the RNA-Seq facility and what we received was an excel spreadsheet titled: "Gene Expression Matrix (CPM)" with thousands of genes across 16 samples in 4 groups. I have tried to ...
written 2.0 years ago by kkadzi250
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Gene Expression Matrix (CPM)
... Dear forum members :) I'm a newb at R and bioinformatics so I am finding myself a little flustered by what to do now. I have obtained a gene expression matrix CPM normalized, with close to 15,000 genes and 16 total samples -> 4 samples in 4 groups. I have been trying to follow the pipelines dire ...
cpm tmm gene expression matrix normailzation written 2.0 years ago by kkadzi250

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