User: Wilkinson, Mark

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16 years, 9 months ago
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Posts by Wilkinson, Mark

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bioconductor GO data package
... Hi, I'm a little confused about the location of the environments GOmolecularfunction, GObiologicalprocess, and GOcellularcomponent in release 1.1.1 of the GO data package. I know they used to be there (1.1.0), but a few days ago I updated to 1.1.1 and now they seem to be missing. Have they been r ...
go written 16.7 years ago by Wilkinson, Mark60 • updated 16.7 years ago by Vincent J. Carey, Jr.6.3k
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Answer: A: contributing to Bioconductor
... <> Oh well. Should anyone be interested in my attempt, I'm attaching the code (in a package, for convenience) anyway. Thanks, Mark Wilkinson Informatics Analyst St. Jude Children's Research Hospital Department of Pharmaceutical Sciences The opinions expressed here are my own and do not ...
written 16.8 years ago by Wilkinson, Mark60
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contributing to Bioconductor
... A few weeks ago there was some talk about a 'heatmap' function that would plot a heat map with two dendrograms to show clustering (after hclust). I mentioned then that I had been cooking something up. I feel like it's ready to give to the community to use, test, break, etc. Which leads me to my q ...
go clustering geneplotter written 16.8 years ago by Wilkinson, Mark60
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Answer: A: heatmap
... This message is in MIME format. Since your mail reader does not understand this format, some or all of this message may not be legible. ------_=_NextPart_000_01C2D9FA.48C66C50 Content-Type: text/plain; charset="iso-8859-1" I'm definitely interested. I've been working on such a function. ...
written 16.8 years ago by Wilkinson, Mark60
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Answer: A: MAS 5.0
... This issue in general has kept me somewhat reluctant to use the affy package. To the affy package authors: is the idea for affy to reproduce the functionality of MAS 5.0 (at least for some parts)? In other words, should I be able to do probe level summaries exactly like MAS5, or is affy's version ...
written 16.9 years ago by Wilkinson, Mark60
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Answer: A: memory requirement
... Here, here. I'd've asked sooner, but suspected I'd be advised the brute force approach of beefing up my machine. I'm running the affy package, specifically, with U133 chips, but am only able to read in 10-15 CEL files at once. Any way around this? I've considered using 'merge' to read a few, mer ...
written 17.1 years ago by Wilkinson, Mark60

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