User: Wilkinson, Mark
Wilkinson, Mark • 60
- Reputation:
- 60
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- New User
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- Last seen:
- 16 years, 9 months ago
- Joined:
- 17 years ago
- Email:
- m*************@stjude.org
Posts by Wilkinson, Mark
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... Hi,
I'm a little confused about the location of the environments
GOmolecularfunction, GObiologicalprocess, and GOcellularcomponent in
release
1.1.1 of the GO data package. I know they used to be there (1.1.0),
but a
few days ago I updated to 1.1.1 and now they seem to be missing. Have
they
been r ...
written 16.7 years ago by
Wilkinson, Mark • 60
• updated
16.7 years ago by
Vincent J. Carey, Jr. ♦ 6.3k
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Answer:
A: contributing to Bioconductor
... <>
Oh well. Should anyone be interested in my attempt, I'm attaching the
code
(in a package, for convenience) anyway.
Thanks,
Mark Wilkinson
Informatics Analyst
St. Jude Children's Research Hospital
Department of Pharmaceutical Sciences
The opinions expressed here are my own and do not ...
written 16.8 years ago by
Wilkinson, Mark • 60
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... A few weeks ago there was some talk about a 'heatmap' function that
would
plot a heat map with two dendrograms to show clustering (after
hclust). I
mentioned then that I had been cooking something up. I feel like it's
ready
to give to the community to use, test, break, etc. Which leads me to
my
q ...
written 16.8 years ago by
Wilkinson, Mark • 60
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Answer:
A: heatmap
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I'm definitely interested.
I've been working on such a function. ...
written 16.8 years ago by
Wilkinson, Mark • 60
0
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Answer:
A: MAS 5.0
... This issue in general has kept me somewhat reluctant to use the affy
package.
To the affy package authors: is the idea for affy to reproduce the
functionality of MAS 5.0 (at least for some parts)? In other words,
should
I be able to do probe level summaries exactly like MAS5, or is affy's
version ...
written 16.9 years ago by
Wilkinson, Mark • 60
0
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Answer:
A: memory requirement
... Here, here. I'd've asked sooner, but suspected I'd be advised the
brute
force approach of beefing up my machine.
I'm running the affy package, specifically, with U133 chips, but am
only
able to read in 10-15 CEL files at once. Any way around this? I've
considered using 'merge' to read a few, mer ...
written 17.1 years ago by
Wilkinson, Mark • 60
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