User: haoran.chen

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Posts by haoran.chen

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Comment: C: Indirect path in KEGG, activation or inhibition?
... Thank you Gabriele! Best, Haoran ...
written 8 months ago by haoran.chen0
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Comment: C: KEGG data error?
... Dear Enrica & Gabriele, Thank you very much for the explanation! May I ask what is the rationale behind the treatment that if a group member of a group (protein complex) could be a gene product for multiple genes, there are binding edges for each pair of genes within this group member and acros ...
written 9 months ago by haoran.chen0
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Comment: C: Indirect path in KEGG, activation or inhibition?
... Dear Enrica & Gabriele, Thank you so much for your prompt reply! Could you please inform me the date of the next release? Thanks again, Haoran ...
written 9 months ago by haoran.chen0
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Indirect path in KEGG, activation or inhibition?
... Hi guys, I'm working on KEGG data recently. And I noticed that there is a kind of "indirect path" without specific label for activation or inhibition. For instance, in PI3K-Akt pathway http://www.genome.jp/kegg-bin/show_pathway?hsa04151, PI3K-PIP3-Akt path is an path with "indirect" label in KEGG ...
graphite bioconductor kegg pathway analysis written 9 months ago by haoran.chen0 • updated 9 months ago by gabriele.sales70
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KEGG data error?
... Hi guys, I tried to analyze PI3K-Akt pathway data from KEGG by Graphite package. But I noticed there are some differences between pathway paradigm on KEGG website http://www.genome.jp/kegg-bin/show_pathway?hsa04151 and downloaded data. For instance, in paradigm, there is a repression path from FOX ...
graphite bioconductor pathway analysis written 9 months ago by haoran.chen0 • updated 9 months ago by gabriele.sales70

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