User: joe.d.moore.ii

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Posts by joe.d.moore.ii

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Comment: C: EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
... Thanks, James. Good to hear from someone who has done this before. Old school here I come.   ...
written 8 months ago by joe.d.moore.ii0
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
... Hi, I am trying to analyze for differential gene expression within a time series of RT-qPCR measured genes across three treatments. Unfortunately, when I try to implement either LRT or ODP on my "deSet" object to determine significantly differentially expressed genes, I encounter an error, seemingl ...
qpcr qvalue edge written 8 months ago by joe.d.moore.ii0 • updated 8 months ago by James W. MacDonald45k
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Comment: C: edge, timeseries analysis, model specification question
... Hi Andy, Could you provide a little more information about the basis for choosing df? I looked through the 2005 PNAS paper and its SI and didn't see a justification for using 2 df for the endotoxin analysis.For what it's worth, I'm doing a longitudinal time course qPCR experiment. Thanks for any h ...
written 9 months ago by joe.d.moore.ii0
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Comment: C: Data format for package "edge"
... Hi there, Were you able to make any headway? I have been studying the edge.pdf, but haven't been able to figure out the data importing for my longitudinal time course study. Thanks for any help.   Joe ...
written 9 months ago by joe.d.moore.ii0

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