User: joe.d.moore.ii

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Posts by joe.d.moore.ii

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Comment: C: EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
... Good to know. Thanks, Gordon.   ...
written 22 months ago by joe.d.moore.ii • 0
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Answer: A: EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
... Thanks for weighing in, John. ...
written 22 months ago by joe.d.moore.ii • 0
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Comment: C: EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
... Thanks, James. Good to hear from someone who has done this before. Old school here I come.   ...
written 2.8 years ago by joe.d.moore.ii • 0
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
... Hi, I am trying to analyze for differential gene expression within a time series of RT-qPCR measured genes across three treatments. Unfortunately, when I try to implement either LRT or ODP on my "deSet" object to determine significantly differentially expressed genes, I encounter an error, seemingl ...
qpcr qvalue edge written 2.8 years ago by joe.d.moore.ii • 0
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Comment: C: edge, timeseries analysis, model specification question
... Hi Andy, Could you provide a little more information about the basis for choosing df? I looked through the 2005 PNAS paper and its SI and didn't see a justification for using 2 df for the endotoxin analysis.For what it's worth, I'm doing a longitudinal time course qPCR experiment. Thanks for any h ...
written 2.8 years ago by joe.d.moore.ii • 0
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Comment: C: Data format for package "edge"
... Hi there, Were you able to make any headway? I have been studying the edge.pdf, but haven't been able to figure out the data importing for my longitudinal time course study. Thanks for any help.   Joe ...
written 2.8 years ago by joe.d.moore.ii • 0

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