User: unamourdeswann

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Posts by unamourdeswann

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Comment: C: Split GRanges to GRangeList based on mcols value
... Cool! Did not know either. ...
written 26 days ago by unamourdeswann0
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Comment: C: Split GRanges to GRangeList based on mcols value
... I did know `split`, but only in combination with another GRL (or seqnames). Glad to know `split` + `~`, thanks! ...
written 26 days ago by unamourdeswann0
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Split GRanges to GRangeList based on mcols value
... I have a GRanges with a factor in mcols gr <- GRanges(seqnames = c("1", "2"), IRanges(start=c(1000, 2000), width=100), strand = c("+", "+"), category = c("A", "B")) I would like to split gr based on category, in order to have a GRangesList that would be similar to: grl <- GRangesList(A=gr[1], ...
granges written 26 days ago by unamourdeswann0 • updated 26 days ago by Michael Lawrence10k
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Comment: C: results function of DESeq2 devel fails
... Thanks a lot! I will wait for their fix. (BTW: BioConductor recommends that seq_len() or seq_along() be used instead of 1:... :-) ...
written 11 months ago by unamourdeswann0
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results function of DESeq2 devel fails
... I tried to follow the DESeq2 tutorial, and ended up with a error. library("pasilla") library("DESeq2") pasCts <- system.file("extdata", "pasilla_gene_counts.tsv", package="pasilla", mustWork=TRUE) pasAnno <- system.file("extdata", "pasilla_sample_annotation.csv", package="pasilla", mustWork=TR ...
deseq2 written 11 months ago by unamourdeswann0

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