## User: mrigaya.mehra

Reputation:
10
Status:
New User
Location:
Last seen:
10 months, 3 weeks ago
Joined:
1 year, 4 months ago
Email:
m************@yahoo.co.in

#### Posts by mrigaya.mehra

<prev • 5 results • page 1 of 1 • next >
3
674
views
3
... Hi Michael, Sorry for a confusing question. I need to identify genes which show differences in all groups. Like a set of common DE genes between a) antibiotic sensitive and antibiotic resistant strains DE(a) b) different motility adaptations DE(b) c) stress related adaptations DE(c) So I want s ...
written 11 months ago by mrigaya.mehra10
3
674
views
3
... Hi all, This is a very general question about an analysis I have been trying to do for quite sometime, but I still do not know how to proceed. I have a series of experiments performed on a single organism which include experiments like: comparing antibiotic sensitive and antibiotic resistant strain ...
written 11 months ago by mrigaya.mehra10 • updated 11 months ago by rrcutler50
1
619
views
1
... Hi, I am using DESeq2 to form a contrast between three different conditions as below: shortname    condition Center1    center Center2    center Center3    center Edge1    edge Edge2    edge Edge3    edge Swim1    swim Swim2    swim Swim3    swim   My design is as follows coldata = with(samples ...
written 11 months ago by mrigaya.mehra10 • updated 11 months ago by Michael Love18k
1
1.7k
views
1
Comment: A: Designing a contrast in DESEQ
... Dear Michael, Thanks for your reply, I have 40 samples from 10 patients. I did follow the example mentioned in the link. I created a group like this dds$group <- factor(paste0(dds$treatment, dds$tissue)) dds$group <- relevel(dds\$group, "control_tissue1") design(dds) <- ~ group dds <- ...
written 16 months ago by mrigaya.mehra10
1
1.7k
views
1
... Hello, I am new to R and DeSEq. I am using DeSeq to identify DE genes in my experiment. The experiment consists of a 2x2 matrix with treatment and control administered in specific tissues. Thus creating 4 different combinations as below 1. treatment_tissue1 2. treatment_tissue2 3. control_tissue ...
written 16 months ago by mrigaya.mehra10

#### Latest awards to mrigaya.mehra

Popular Question 14 months ago, created a question with more than 1,000 views. For Designing a contrast in DESEQ

Content
Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.