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Posts by mrigaya.mehra
Comment: A: Designing a contrast in DESEQ
... Dear Michael, Thanks for your reply, I have 40 samples from 10 patients. I did follow the example mentioned in the link. I created a group like this dds$group <- factor(paste0(dds$treatment, dds$tissue)) dds$group <- relevel(dds$group, "control_tissue1") design(dds) <- ~ group dds <- ...
... Hello, I am new to R and DeSEq. I am using DeSeq to identify DE genes in my experiment. The experiment consists of a 2x2 matrix with treatment and control administered in specific tissues. Thus creating 4 different combinations as below 1. treatment_tissue1 2. treatment_tissue2 3. control_tissue ...
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