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Answer: Answer: Error in downloading GEO Supplementary files
2.1 years ago tcalvo ▴ 90
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1.0k
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Comment: Comment: Complex contrasts in limma
2.1 years ago tcalvo ▴ 90
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2
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1.0k
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Complex contrasts in limma
RNASeq limma DifferentialExpression
2.1 years ago tcalvo ▴ 90
1
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771
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Answer: Answer: Description of the headers obtained from the Eligos2 output
2.1 years ago tcalvo ▴ 90
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2.0k
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Comment: Comment: Three way-interaction on voom (limma) data, including a factor with > 2 levels
2.1 years ago tcalvo ▴ 90
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1.1k
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Comment: Comment: error in installation of 'org.Hs.eg.db'
3.4 years ago tcalvo ▴ 90
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2.8k
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Comment: Comment: Error in lfcShrink
3.4 years ago tcalvo ▴ 90
2
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3
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1.7k
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Normalization for within-sample gene correlation
edgeR Normalization DESeq2 tpm RNASeq
updated 3.4 years ago by 50k • written 3.4 years ago by ▴ 90
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1.7k
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Comment: Comment: Normalization for within-sample gene correlation
3.4 years ago tcalvo ▴ 90
1
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1
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2.8k
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Answer: Answer: Error in lfcShrink
3.4 years ago tcalvo ▴ 90
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1
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865
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Comment: C: Is it allowed to fit two models to make between and within subjects comparisons
5.2 years ago tcalvo ▴ 90
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3
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865
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Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects
5.2 years ago tcalvo ▴ 90
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2.5k
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Comment: C: limma-voom duplicateCorrelation once or twice, difference?
5.5 years ago tcalvo ▴ 90
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2.5k
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Comment: C: limma-voom duplicateCorrelation once or twice, difference?
5.5 years ago tcalvo ▴ 90
10
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5
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2.5k
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limma-voom duplicateCorrelation once or twice, difference?
limma-voom duplicatecorrelation random effects
updated 5.5 years ago by 50k • written 5.5 years ago by ▴ 90
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1.6k
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Comment: C: RankProd crashing - stability issues?
6.4 years ago tcalvo ▴ 90
2
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3
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3.2k
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DESEq2 p-values weird distribution under the H0 and fdrtool
rnaseq deseq2 fdrtool differential gene expression
6.7 years ago tcalvo ▴ 90
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3.2k
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Comment: C: DESEq2 p-values weird distribution under the H0 and fdrtool
6.7 years ago tcalvo ▴ 90
10
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3
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8.9k
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Volcanoplot with limma - RAW P-values or Adj.P-Values
volcanoplot limma fdr
6.7 years ago • updated 3.4 years ago tcalvo ▴ 90
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8.9k
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Comment: C: Volcanoplot with limma - RAW P-values or Adj.P-Values
6.7 years ago • updated 3.4 years ago tcalvo ▴ 90
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2.0k
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Answer: A: biomaRt Ensembl ID query returns NA in 'ensembl_gene_id', 'ensembl_transcript_id
6.8 years ago tcalvo ▴ 90
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3.2k
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Answer: A: RSQLite reverse dependencies
6.8 years ago tcalvo ▴ 90
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1.4k
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Answer: A: Getting gene annotation for a GEO dataset
6.8 years ago tcalvo ▴ 90
2
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1
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923
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Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 6.8 years ago by ★ 2.0k • written 6.8 years ago by ▴ 90
2
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2
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4.2k
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How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.0 years ago • updated 3.4 years ago tcalvo ▴ 90
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