User: alexlok

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alexlok0
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Posts by alexlok

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Comment: C: txImport: a gene seems missing from the sample data
... Hi Michael, Indeed I'm generating my own tx2gene table. My question was really just about the tximportData dataset, and you have perfectly answered it. Thank you. ...
written 2.5 years ago by alexlok0
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Comment: C: txImport: a gene seems missing from the sample data
...  For my question 1, I didn't notice the function makeTxDbFromGFF() from GenomicFeatures, that indeed provides another way to generate the tx2gene list. So I'm just left with the second question: out of curiosity, is it going to be a problem, and should I report it someplace? ...
written 2.5 years ago by alexlok0
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txImport: a gene seems missing from the sample data
... Dear all, txImport requires a txdb file with correspondences between transcript names and gene names. In the sample data provided by txImportData, there is a pre-constructed table. I was interested in reconstructing it from the sequence files, but I ended up with a discrepancy: a gene (3 transcrip ...
tximport tximportdata written 2.5 years ago by alexlok0 • updated 2.5 years ago by Michael Love25k

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Popular Question 2.5 years ago, created a question with more than 1,000 views. For txImport: a gene seems missing from the sample data

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