User: Sandip Darji

gravatar for Sandip Darji
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Location:
USA/New York/Nathan Kline Institute for Psychiatric Research
Twitter:
wondersandy86
Last seen:
2 days, 7 hours ago
Joined:
8 months, 3 weeks ago
Email:
d***************@yahoo.com

Posts by Sandip Darji

<prev • 5 results • page 1 of 1 • next >
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Comment: C: remove microarray batch effects using Limma
... That's what I thought. Thanks for clarification and that too so promptly. Sandip ...
written 5 weeks ago by Sandip Darji0
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Comment: C: remove microarray batch effects using Limma
... Dear Dr. Smyth, As Mike pointed out, here is the NOTE on help page of removeBatchEffect: "This function is not intended to be used prior to linear modelling. For linear modelling, it is better to include the batch factors in the linear model.".  In the example above (Answer to Xie Zhi), which you ...
written 5 weeks ago by Sandip Darji0
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Comment: C: Can I combine quants from SE and PE reads from replicates of same sample in Salm
... Thanks, again. ...
written 8 weeks ago by Sandip Darji0
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Comment: C: Can I combine quants from SE and PE reads from replicates of same sample in Salm
... Thank you so much Dr. Love for your prompt response.  I am including "batch" vector (batch 1 for SE reads and batch 2 for PE reads). So to confirm, you can treat quants from biological replicates as if they are normal replicates and it doesn't matter whether they are SE or PE. In other words, you c ...
written 8 weeks ago by Sandip Darji0
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Can I combine quants from SE and PE reads from replicates of same sample in Salmon Quasi-mapping mode?
... Dear Dr. Patro, developers of Salmon and BioC community, I have put great amount of effort to find out answer to this question on internet. Couldn't find it anywhere (bioconductor, biostars, seqanswers, github etc.). I have 3 replicates for each sample and one of the replicates from each sample is ...
salmon tximport limma-voom written 8 weeks ago by Sandip Darji0 • updated 8 weeks ago by Michael Love15k

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