User: sherman.leung

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Posts by sherman.leung

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Comment: C: pcaGoPromoter PCA plot in R: issue with EntrezID conversion
... Thank you James, that was very helpful. I've focused my troubleshooting onto why the geneSymbols are not successfully converting into entrezIDs. No luck yet, but all the geneSymbols used in my input above are able to be mapped as entrezIDs from the org.Hs.egALIAS2EG database, when I use the below sy ...
written 16 months ago by sherman.leung10
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pcaGoPromoter PCA plot in R: issue with EntrezID conversion
... I want to make a PCA plot with pcaGoPromoter in R. The PCA plot is successfully output. But the error message is concerning (1358x NAs, printed 8 times, so 10864x NAs). The script triggering this converts gene symbol input into entrezID. When not all gene symbol inputs match the annotationDBI ...
pca pca plot pcagopromoter written 16 months ago by sherman.leung10 • updated 16 months ago by James W. MacDonald46k

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