User: Chris Stubben
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- Salt Lake City, Utah
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- 1 day, 12 hours ago
- 8 months, 2 weeks ago
Posts by Chris Stubben
... It's not very clear in the Note on Factor Levels in the DESeq2 vignette that you should not reorder factors after running DESeq2. I will only reorder factors in sample tables from now on. ...
... I recently updated to R version 3.4.2 and noticed that DESeq2 results now returns an error if I relevel the factors. library(DESeq2) cnts <- matrix(rnbinom(n=1000, mu=100, size=1/0.5), ncol=10) samp <- data.frame( cond=factor(rep(c("a", "b"), each=5))) dds <- DESeqDataSetFromMatrix(cnts ...
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