User: seb.boegel

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seb.boegel0
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Posts by seb.boegel

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Comment: C: tximport - using hg38 with RefSeq (NM) and Gene Symbol
... Great, that works. Thank you very much for your great help ...
written 8 months ago by seb.boegel0
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tximport - using hg38 with RefSeq (NM) and Gene Symbol
... I used salmon to map RNA-Seq data against hg38 from UCSC. In quant.sf i have the Ref-seq transcript IDs. I now want to use tximport to aggregate to gene level. However "TxDb.Hsapiens.UCSC.hg19.knownGene" is of little use, as they neither contain RefSeq Ids nor Gene Symbols (or am i wrong here)? Wha ...
salmon hg38 tximport tx2gene.csv written 8 months ago by seb.boegel0 • updated 8 months ago by Michael Love15k

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