User: Dave

gravatar for Dave
Dave0
Reputation:
0
Status:
New User
Location:
Last seen:
2 days, 11 hours ago
Joined:
8 months, 1 week ago
Email:
f********@yahoo.com

Posts by Dave

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answers
298
views
1
answers
Comment: C: DESEq2 Paired samples: Baseline Versus each Timepoint
... Thanks Michael. Works very nicely. One thing I am not sure about, how does DESEQ2 know which timepoints the user wants to do the paired analysis between ? For example not just "Day0 Versus Day1" but also "Day1 versus Day7" Thanks as always for your help and time.   ...
written 15 days ago by Dave0
0
votes
1
answers
298
views
1
answers
Comment: C: DESEq2 Paired samples: Baseline Versus each Timepoint
... Thanks Michael Its no longer giving me the error, the missing columns was causing the problem and it is written down in your docs, my apologizies. I modified the input file inline with equal columns across the groups as below. When convenient would you or someone please check my code below? My qu ...
written 19 days ago by Dave0
0
votes
1
answers
298
views
1
answers
Comment: C: DESEq2 Paired samples: Baseline Versus each Timepoint
... Thanks Michael I tried the last few hours to get this working with the link you sent. I keep getting: "Error in checkFullRank(modelMatrix) :   the model matrix is not full rank, so the model cannot be fit as specified." I changed the colnamesin my above design to from (Patient.ID library Timepo ...
written 20 days ago by Dave0 • updated 20 days ago by Michael Love14k
0
votes
1
answers
298
views
1
answers
Comment: C: DESEq2 Paired samples: Baseline Versus each Timepoint
... Thanks Michael for your answers and time. A follow up question:   How do I compare: Q1) Baseline Vs Day1 for a given library : list of DE genes a) For Library A only :Baseline Vs Day1: list of DE genes a) For Library B only :Baseline Vs Day1: list of DE genes a) For Library C only :Baseline V ...
written 20 days ago by Dave0
0
votes
1
answer
298
views
1
answer
DESEq2 Paired samples: Baseline Versus each Timepoint
... Hello   I am a newbie and I have the following experimental factors as below. I read very carefully the different posts and tutorial but I am still uncertain on how to design my experiment formula. I wanted to know how to use DSEQ2 to look at the paired samples to see which genes are being differ ...
deseq2 written 8 months ago by Dave0 • updated 8 months ago by Michael Love14k

Latest awards to Dave

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 182 users visited in the last hour