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Posts by ofonov
... Hi, I got somewhat lost in the parameters of RIPseeker. I would like to do peak calling on the data produced with TruSeq Smalll RNA Illumina protocol. It is a stranded library prep protocol - sequencing reads from read 1 map to the antisense strand and those from read 2 map to the sense strand. S ...
... I am having troubles getting results with RIPSeeker vignette example. I have installed all dependency packages, and use code from the vignette. plotCoverage works as expected, however main functionality - ripSeek does not output any result. library(RIPSeeker) extdata.dir <- system.file("extda ...
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