User: ofonov

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ofonov0
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Posts by ofonov

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RIPseeker peak calling parameters for TruSeq Samll RNA stranded library
... Hi, I got somewhat lost in the parameters of RIPseeker. I would like to do peak calling on the data produced with TruSeq Smalll RNA Illumina protocol. It is a stranded library prep protocol -  sequencing reads from read 1 map to the antisense strand and those from read 2 map to the sense strand. S ...
ripseeker rna-seq rip written 5 weeks ago by ofonov0
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RIPSeeker ripSeek does not produce any output
... I am having troubles getting results with  RIPSeeker vignette example. I have installed all dependency packages, and use code from the vignette. plotCoverage works as expected, however main functionality  - ripSeek does not output any result. library(RIPSeeker) extdata.dir <- system.file("extda ...
ripseeker ripseek rip written 5 weeks ago by ofonov0

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