User: tungphannv

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tungphannv0
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Posts by tungphannv

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Comment: C: DESeq2 Following RSEM
... From the vignette, I think tximport expect a list of .genes.files from RSEM. For some reason, I don't have those files. The only data I have is the tsv file with the expected counts in above format (e.g first column is the list of genes, and the next 8 columns contains expected counts - 4 of them ar ...
written 9 weeks ago by tungphannv0
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Answer: A: DESeq2 Following RSEM
... I think it comes from the way RSEM assign their counts to certain genes since RSEM estimates abundances for transcript/genes. ...
written 9 weeks ago by tungphannv0
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DESeq2 Following RSEM
... I am using RNA-seq data processed by RSEM given by someone else. The data has this format: sample1 sample2 sample3 sample4 sample5 sample6 A1BG 94.64 278.03 94.07 96.00 55.00 64.03 A1BG-AS1 64.28 114.08 98.88 109.05 95.32 73.11 A1CF 0.00 2.00 1.00 ...
rnaseq deseq2 written 10 weeks ago by tungphannv0 • updated 9 weeks ago by Michael Love12k

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