User: Ido M. Tamir

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Ido M. Tamir320
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Posts by Ido M. Tamir

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[JOB] Bioinformatics Data Analyst (Vienna,AT)
... http://www.imp.ac.at/fileadmin/imp/Documents/Positions_PhDPosters/AD_I nserat_MB.pdf The Research Institute of Molecular Pathology (IMP) is a basic biomedical research institute sponsored largely by Boehringer Ingelheim, as well as research grants from national and international funding agencies. O ...
written 8.7 years ago by Ido M. Tamir320
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Answer: A: Is there some packages for RNA-seq data analysis?
... On Saturday 17 July 2010 00:20:10 Jinyan Huang wrote: > For RNA-seq, illumina/solex data. specifically: http://bioconductor.org/packages/2.6/RNAseq.html and generally: http://bioconductor.org/packages/2.6/HighThroughputSequencing.html I don't know why edgeR is not in the specific list. best, i ...
written 9.2 years ago by Ido M. Tamir320
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Job: Bioinformatics Data Analyst in Vienna, Austria
... IMBA and IMP are basic research institutes that conduct biomedical research and are funded by Boehringer Ingelheim and the Austrian Academy of Science. For our Bioinformatics support unit, we are seeking a highly motivated, full-time Bioinformatics Data Analyst (m/f) You will work in close colla ...
written 9.6 years ago by Ido M. Tamir320
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Comment: C: mm8 to mm9 conversion
... On Sunday 20 January 2008 21:15:55 joseph wrote: > Hi > > I have a data frame generated from mouse promoter tiling > arrays with the first column as genomic position from Assembly mm8 > (Feb.2006) and the second column is a p-value associated with the probe at > the indicated posit ...
written 11.7 years ago by Ido M. Tamir320
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Answer: A: how to analyse a matrix of genes vs samples with limma
... On Thursday 13 December 2007 09:38:02 Federico Abascal wrote: > Estimated colleagues, > I have a matrix with columns corresponding to different experiments or > samples, and rows corresponding to genes. In a separate vector of > factors I have a label indicating to which class each samp ...
written 11.8 years ago by Ido M. Tamir320
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Answer: A: One-Color Aglent Data into Limma GUI
... On Tuesday 09 October 2007 06:32, elliot harrison wrote: > Hi All, > > I'm trying to work with One-color agilent data without much luck. > http://article.gmane.org/gmane.science.biology.informatics.conductor /128 > 18/match=agilent > > I've tried the above method but as I posted ...
written 12.0 years ago by Ido M. Tamir320
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Answer: A: HELP! lmFit and duplicateCorrelation
... On Tuesday 09 October 2007 01:20, Tiandao Li wrote: > Hello, > > I had arrays with 4 replicate spots per gene. I used limma package for > data analysis. > > > targets > > SlideNumber FileName Cy3 Cy5 Name > Field1 1 13617731 WBM WC Field1 > Fiel ...
written 12.0 years ago by Ido M. Tamir320
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request for simple usage of probe level normalisations
... Dear All, a) I don't know, if sequence based models like GCRMA, which I read stands actually for "GeneChip (tm)" not GC content, can be extended to other platforms. I am just looking at single color agilent chips and there is a gc content bias: log2(intensity)~gc percentage: Coefficients: Estimate ...
cdf gcrma oligo pdinfobuilder written 12.0 years ago by Ido M. Tamir320 • updated 12.0 years ago by Kasper Daniel Hansen6.4k
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Answer: A: Agilent 4x44 single color expression arrays
... On Thursday 04 October 2007 06:13, Ido M. Tamir wrote: > Dear list, > > is there anybody with experience in normalising Agilent > 4x44 single color expression arrays? > > Any suggestions on preferred normalization methods, > or at least reading it into limma in a way that I can ...
written 12.0 years ago by Ido M. Tamir320
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Agilent 4x44 single color expression arrays
... Dear list, is there anybody with experience in normalising Agilent 4x44 single color expression arrays? Any suggestions on preferred normalization methods, or at least reading it into limma in a way that I can separate the 4 different conditions (time course) that are on each array? I have three b ...
normalization probe vsn limma gcrma written 12.0 years ago by Ido M. Tamir320

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Popular Question 8.7 years ago, created a question with more than 1,000 views. For Job: Bioinformatics Data Analyst in Vienna, Austria

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