User: cardin.julie

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Posts by cardin.julie

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Protein differential Expression analysis
... I have experienced very good results with DESeq2 for my RNASeq analysis. As far as I understand, it is a tool that normalise our data from sequencing to make them comparable. I have a new project implicating proteins counts. I have  couple of data sets. For each sample we have: rows with proteins ...
proteomics differential expression written 20 months ago by cardin.julie0 • updated 20 months ago by Laurent Gatto1.2k
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DESeq2 on 2 genotypes versus 1 control
... Hi,   I am student in bioinformatics. I had read the nice vignette for DESeq2. There is a lot of nice information. But even if it is great, I still have a question to address and I am not sure which approach I should use. I have already done DESeq2 for one group versus control and it works well. I ...
deseq2 written 2.3 years ago by cardin.julie0 • updated 2.3 years ago by Michael Love25k
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Deseq2 to nanlyse one level / condition
... Hi,    I have a dataset form RNAseq, I have only the ht-seq-counts results. I have 551 patients with cancers that have been sequenced. So I have only one level, one condition. But I have n=551 patients. Can I use Deseq2 to see a differential expression in my patient cohort even if I have no control ...
deseq2 written 2.5 years ago by cardin.julie0 • updated 2.5 years ago by James W. MacDonald51k

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