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Posts by hefin_8
... Hi, my working directory contains two fcs files which I load like this: library(flowCore) fSet <- read.flowSet(alter.names = TRUE, pattern = "fcs") Earlier today, in R3.1, the following would produce a scatterplot matrix: library(flowViz) splom(fSet[]) This afternoon I updated to R3.4 ...
... I'm trying to get quality control metrics of flow cytometry data using the flowQ package using the code below: # LOAD PACKAGES AND DATA ---- library(flowCore) library(flowQ) data(GvHD) # CREATE QUALITY CONTROL METRICS ---- cellNum <- qaProcess.cellnumber(GvHD, outdir = getwd(), pdf = FALSE) ma ...
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