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Posts by schwarzl
... Hi Mike, thanks so much for your answer. Thanks, I already had a look at that and had a chat with Simon recently. There are certain reasons why a window approach would be advantageous, because of different cross-linking and binding dynamics. We will try do simulate data and do permutation test to te ...
... Dear Bioconductor Support Forum, we are using DESeq2 to call differentially expressed window for overlapping sliding window on transcriptomic regions (50nt, 20nt steps for testing, this can vary). Because the different properties of our data (eCLIP), csaw is not optimal for multiple reason (differe ...
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