User: jorrenkuster

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Posts by jorrenkuster

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Comment: C: Path to file in windows
... It works now, thanks a lot for your help ...
written 4 months ago by jorrenkuster0
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Comment: C: Path to file in windows
... > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252 LC_NUMERIC=C                           [5] LC_TIME=English_United States.1252   ...
written 4 months ago by jorrenkuster0
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Comment: C: Path to file in windows
... > getwd() [1] "\\\\home2.science.ru.nl/jkuster/R/win-library/3.0/Data_ChIP_Experiment" > samples <- read.csv('Examplesheet.csv', header=T) > print(samples)                 SampleID Tissue Factor Condition Replicate                                        bamReads bamControl 1         ...
written 4 months ago by jorrenkuster0
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Comment: C: Path to file in windows
... I input all the recommendations you said en both files return TRUE.  The error unfortunately remains the same  bam/aligned_S00D63H1.filtered.bam not accessible ...
written 4 months ago by jorrenkuster0
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Comment: C: Path to file in windows
... This is the Samplesheet I am using.  The samplesheet is located in the directory where I run DiffBind. SampleID Tissue Factor Condition Replicate bamReads bamControl Peaks PeakCaller Counts S00D63H1 iPSC RUNX1 DOX 1 bam/aligned_S00D63H1.f ...
written 5 months ago by jorrenkuster0
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Comment: C: Path to file in windows
... If I run the command the output is as follows: > file.exists("aligned_S00D47h1-RUNX1.filtered.bam") [1] TRUE   ...
written 5 months ago by jorrenkuster0
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Comment: C: Path to file in windows
... Hi Gord, It warns about all the files I want to use. I will post it there soon, thanks. Jorren ...
written 5 months ago by jorrenkuster0
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Path to file in windows
... Hi all, I have a question about generation a path in R with a file in a windows path. Currently I am using this path for a bamfile counting reads for DiffBind: bamReads = "U:/R/win-library/3.0/Data_ChIP_Experiment/aligned_S00D47H1-RUNX1.filtered.bam" This does not work at the moment. Cause the e ...
diffbind windows R bioconductor written 5 months ago by jorrenkuster0 • updated 4 months ago by Gord Brown510
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Error in dba.count
... Dear Sir, Madam, I run into this problem again and again. I have looked at the same question on Bioconductor before, but for me it still is not working. If someone could please help me, I will be very grateful.  I am trying to do the dba.count command out of the DiffBind package in R. Creating the ...
diffbind R written 5 months ago by jorrenkuster0 • updated 5 months ago by James W. MacDonald44k

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