User: md27

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md270
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Posts by md27

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Comment: C: DESeq extract result of lrt for a subset of the samples
... Thank you so much! I didn't know anything like this before. Will try it out! Thank you for all your contributions to the community Michael! ...
written 19 days ago by md270
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Comment: C: DESeq extract result of lrt for a subset of the samples
... Yes I thought so as a first step, it's not the final goal but I thought this should be easily done (maybe I'm wrong about it). Maybe I could do it the other way round: could I just do the pairwise comparison as you suggested, and get a list of genes differentially expressed between each combination ...
written 20 days ago by md270
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Comment: C: DESeq extract result of lrt for a subset of the samples
... Hi, Thank you! I did see this group option and I thought it should do what I wanted. But my problem again is not to compare two species, but all 16 species at once, or at least a subset of them, say 11 species. What would be the contrast or name to call for this?  And Should I use this group optio ...
written 20 days ago by md270
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DESeq extract result of lrt for a subset of the samples
... Hi, I'm quite new to R and RNA-seq data analysis. I have been looking through some posts here but did not find an answer to what I was looking for, hope someone could help me here:) I'm using DESeq2 to analyse RNA-seq data set with 96 samples: 16 different species, 2 types of tissue each (M, L), a ...
rnaseq deseq2 lrt written 21 days ago by md270 • updated 20 days ago by Michael Love12k

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