User: Nikolay.Oskolkov

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Posts by Nikolay.Oskolkov

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Answer: A: Error while smoothing BS-seq data with bsseq
... And here btw is the BSseq object structure:   ..@ trans          :function ()     ..@ parameters     : list()   ..@ rowRanges      :Formal class 'GRanges' [package "GenomicRanges"] with 6 slots   .. .. ..@ seqnames       :Formal class 'Rle' [package "S4Vectors"] with 4 slots   .. .. .. .. ..@ valu ...
written 22 months ago by Nikolay.Oskolkov0
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Answer: A: Error while smoothing BS-seq data with bsseq
... Hi Kasper, I have a similar error from BSmooth that I can not solve: bismarkBSseq.fit<-BSmooth(bismarkBSseq,mc.cores=1,verbose=TRUE) [BSmooth] preprocessing ... done in 35.6 sec [BSmooth] smoothing by 'sample' (mc.cores = 1, mc.preschedule = FALSE) [BSmooth] smoothing done in 2893.2 sec Error i ...
written 22 months ago by Nikolay.Oskolkov0

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