User: stephensmith

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Posts by stephensmith

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Comment: C: DESeq2 DESeqDataSetFromTximport design formula
... Ah very nice. That means I won't have to rerun tximport every time. Thank you very much Michael. Finding salmon, tximport, deseq2 a very nice pipeline! ...
written 2.5 years ago by stephensmith0
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Comment: C: DESeq2 DESeqDataSetFromTximport design formula
... I guess what I'd like to do is to be able to compare all samples which are expressing six1, eya1, or six1eya1 with the rest in order to increase my statistical significance. So when I run contast I can call "six1eya1", "y", "n" or contrast= c("six1", "y", "n") etc. I'm starting to think it might b ...
written 2.5 years ago by stephensmith0
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DESeq2 DESeqDataSetFromTximport design formula
... Hi, I am doing some RNA-seq analysis and am running into the Matrix is not full rank error. It has 16 samples, 8 different treatments so 2 samples per treatment If i run this ddsTxi= DESeqDataSetFromTximport( txi, colData= samples, design= ~condition) it works but anything other than this, e. ...
deseq2 written 2.5 years ago by stephensmith0 • updated 2.5 years ago by sina.nassiri90

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