User: Lennart.Vermander

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Posts by Lennart.Vermander

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Comment: C: Testing for DE genes
... Thanks for your replies! For the group task we had to analyze a similar RNAseq dataset as well. We finished this yesterday and the results showed little differential expression too. So we already kind of figured that it was indeed because of the data set, not because of some big mistake we made.  W ...
written 14 months ago by Lennart.Vermander10
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Comment: C: Testing for DE genes
... Most of the code is basically copy-paste from the examples we got, including the use of Bonferonni. But I don't really think the error lies in the correction method. With Bonferonni we got 10 DE genes and with BH that still was only a meager 20 genes. On such a large dataset, that just seems way too ...
written 14 months ago by Lennart.Vermander10
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Testing for DE genes
... Hello everyone For a group project, we had to process a raw micro array data set using bioconductor and draw some conclusions. We chose this data set for our project. We looked a bit at the data and preprocessed it, but when we wanted to test for differential expressed genes, we got some strange re ...
limma differential gene expression affymetrix microarrays written 14 months ago by Lennart.Vermander10 • updated 14 months ago by Aaron Lun20k

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