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Posts by learoser
... Just an improvement to the test script: I have added the trimAdapter function of girafe. It reaches a compromise between sensitivity/specificity of 89%/82%, using default values. I also corrected a bug in my trimLRpatterns call, dividing by 100 the value I used for max.Rmismatch, to compute an erro ...
... Hello BioC, I am running some tests to compare trimLRpatterns vs other trimming tools (Skewer, cutadapt, AdapterRemoval). I've generated simulated data using ART (https://www.niehs.nih.gov/research/resources/software/biostatistics/art/index.cfm). In particular, there's a modified version of the pr ...
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