User: pedrostrusso

gravatar for pedrostrusso
pedrostrusso30
Reputation:
30
Status:
New User
Location:
Last seen:
9 months, 1 week ago
Joined:
2 years, 5 months ago
Email:
p***********@gmail.com

Posts by pedrostrusso

<prev • 3 results • page 1 of 1 • next >
1
vote
2
answers
710
views
2
answers
Comment: C: WGCNA: relate modules to binary trait
... You're right, it doesn't look like you need the apply_vst parameter. About the qqplot, it looks like you could go either way... maybe Spearman could be a little more on the safe side, but I don't think Pearson would be a bad choice either. About the group comparisons, as you said before, both packa ...
written 9 months ago by pedrostrusso30
1
vote
2
answers
710
views
2
answers
Comment: C: WGCNA: relate modules to binary trait
... Hi Lin, sorry, I didn't notice the 5000 genes you used as input. Since you previously filtered your dataset, did you remember to include the *filter*=FALSE parameter in your *cemitool* function call? Otherwise, the function will filter your already filtered dataset, which would probably cause some b ...
written 9 months ago by pedrostrusso30
1
vote
2
answers
710
views
2
answers
Answer: A: WGCNA: relate modules to binary trait
... Hi Lin, thanks for using CEMiTool! CEMiTool's automatic filter is, as you may have noticed, quite stringent, and it tends to leave in the analysis mostly genes with significant activity in their given pathways. This is probably why you found that all your modules ended up being differentially expre ...
written 9 months ago by pedrostrusso30

Latest awards to pedrostrusso

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 238 users visited in the last hour