User: ahmadvandra

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Posts by ahmadvandra

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how to use q value to select differentially expressed genes
... I have cuffdiff files including control and treated FPKMs, log2 fold change, p-value, q-value, test stat. and significance values . To select differentially expressed genes (up/down regulated genes) respect to fold change, I would like to know whether I should only select those genes with q- values& ...
rnaseq written 5 months ago by ahmadvandra0 • updated 5 months ago by Lluís R300
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Answer: A: Dr. Armin Ahmadvand
... Dear Steve, Thank you for your comments. I think you could guess my problem. I tried once again, but I got another problem error message:   >Error in heatmap3(Negin_AE_BD) : 'x' must be a numeric matrix  Now, I have realised that the problem is in the gene ID column, which is not numeric. When ...
written 5 months ago by ahmadvandra0
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Dr. Armin Ahmadvand
... I am a beginner in using R-studio to create a heat map from RNA-Seq data. I have imported csv format of cuffdiff file including FPKMs of control and treated samples, Log2, and p-value. After installing the packages "pheatmap"and "RColorBrewer", I ran the function pheatmap(file.csv):  View(Negin_AE_ ...
rnaseq R written 6 months ago by ahmadvandra0

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