User: alexandriapinto1

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Posts by alexandriapinto1

<prev • 8 results • page 1 of 1 • next >
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Comment: C: BASiCS spike info for single cell RNA sequences or Bayesian statistics help
... Ah okay! Thank you anyway ...
written 20 months ago by alexandriapinto110
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
... Hi,  I am dealing with a dataset and I do not believe any spike in were included. I want to use BASiCS to help my clustering but it requires the use of spike information. Is there a way to use BASiCs without the information? Alternatively, is there another package I could use to use bayesian stati ...
bayesian single cell scrnaseq basics written 20 months ago by alexandriapinto110 • updated 20 months ago by CataVallejos10
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Comment: C: SC3_estimate_k formatting error?
... Hi again, I am getting the same error as before but this time I have done all the QC steps. No cells are empty or infinite. I don't really understand why it's not working. ...
written 20 months ago by alexandriapinto110
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Comment: C: SC3_estimate_k formatting error?
... Of course! No rush!  ...
written 22 months ago by alexandriapinto110
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Comment: C: SC3_estimate_k formatting error?
... have you been able to reproduce the error? ...
written 22 months ago by alexandriapinto110
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Comment: C: SC3_estimate_k formatting error?
... I sent you the dataset, it is rather large though. Thank you for any help you can give me! ...
written 23 months ago by alexandriapinto110
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SC3_estimate_k formatting error?
... Hello, I am trying to get an estimation of the number of single cell clusters exist in my data. My code is as follows:  primedsce <- SingleCellExperiment(assays = list(counts = primedData)) primedsce <- calculateQCMetrics(primedsce,feature_controls = list(ERCC=primedmatchesERCC,MT = primedm ...
scater sc3 written 23 months ago by alexandriapinto110 • updated 22 months ago by Vladimir Kiselev150
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Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
... I've been following multiple tutorials trying to get started with monocle and cufflinks. I'm running the software using hisat2 ->cuffquant->cuffnorm -> monocle as suggested by the getting started portion of the monocle manual. When I display featureData/fData from my newCellDataSet I get ex ...
monocle cufflinks written 2.4 years ago by alexandriapinto110

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