User: jcfnielsen

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Posts by jcfnielsen

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Comment: C: Normalization for comparative transcriptomics between species
... This kind of comparative analysis between species has been done before e.g. between ant species and between rat and human. However, nothing is stated in the methods section in these two paper about what they did to ensure proper normalization to account for e.g. varying genome size across species. M ...
written 11 months ago by jcfnielsen0
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Normalization for comparative transcriptomics between species
... I would like to compare expression levels of orthologous genes in different species for the purpose of conducting a co-expression analysis such as WGCNA. I am using DESeq2 with the the following RNA-seq data: 6 different species (the species are from the same genus and phylogentically related) 2 d ...
deseq2 wgcna written 11 months ago by jcfnielsen0 • updated 11 months ago by Michael Love17k

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