User: aaron.dickey

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Posts by aaron.dickey

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Answer: A: ensembldb salmon deseq2 txt2import right tool?
... Thanks Johannes, That makes sense. It seems since the pseudomapping was done to the v89 transcriptome that the same gene model should be used. I guess more of a theoretical than a practical question of whether an earlier gene model would be appropriate. Thanks again! ...
written 2.4 years ago by aaron.dickey0
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ensembldb salmon deseq2 txt2import right tool?
... I have 20 paired end libraries pseudomapped to the rat transcriptome with Salmon and I wish to create a tx2gene dataframe via the ensembldb package for downstream analysis in deseq2 as recommended here: Note: if you are using an Ensembl transcriptome, the easiest way to create the tx2gene data.fram ...
deseq2 ensembldb written 2.4 years ago by aaron.dickey0

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