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Posts by aaron.dickey
... Thanks Johannes, That makes sense. It seems since the pseudomapping was done to the v89 transcriptome that the same gene model should be used. I guess more of a theoretical than a practical question of whether an earlier gene model would be appropriate. Thanks again! ...
... I have 20 paired end libraries pseudomapped to the rat transcriptome with Salmon and I wish to create a tx2gene dataframe via the ensembldb package for downstream analysis in deseq2 as recommended here: Note: if you are using an Ensembl transcriptome, the easiest way to create the tx2gene data.fram ...
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