User: Shrule

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Shrule0
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Posts by Shrule

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Comment: C: Converting Exon counts(co-ordinates) to transcript/gene ids
... Probably should have mentioned, the reason I'm working with exon level data is that I'm looking at a novel transcript, I have the chr co-ordinates for the novel transcript so the idea was to annotate the gtf file with the novel transcript and use DexSeq to look at expression levels.  ...
written 15 months ago by Shrule0
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Converting Exon counts(co-ordinates) to transcript/gene ids
... Hi, I have a question regarding the input data into DExSeq. I'm working with level 3 TCGA exon_quantification data which looks likes this: Hybridization REF TCGA-3C-AAAU-01A-11R-A41B-07 TCGA-3C-AALI-01A-11R-A41B-07 TCGA-3C-AALJ-01A-31R-A41B-07 exon raw_counts raw_counts raw_counts raw_counts chr ...
cancer dexseq bioconductor rna-seq written 15 months ago by Shrule0

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