User: rockyb

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rockyb0
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Posts by rockyb

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Answer: A: Human reference primary assembly and masking using BioStrings and BSgenome
... Hi, injectHardMask doesn't work as it isn't a maskedDNAString - it's just a DNAString set. Nonetheless, created a solution to Q2 in the form of a function - see below. maskGenome <- function(chrname,start,end) {   ##start is 1based and start and end are inclusive i.e. [1,5]   maskAt <- IRa ...
written 12 months ago by rockyb0
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Human reference primary assembly and masking using BioStrings and BSgenome
... Hi, I'm new to using BioStrings and the BSgenome packages in R, and am having some trouble with my analysis. What I'm trying to do is to take the latest human genome reference release from the GRC and transform it into something useable for GATK analysis. Essentially, I want to read the FASTA file ...
bsgenome biostrings R written 12 months ago by rockyb0

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