User: Maiv

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Maiv0
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Posts by Maiv

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Comment: C: Making sense out of makeContrasts and using coefficents for contrasts
... Hi, thank you for replying. Yes, I've been running analyses based on Aarons answer, which was very helpful. I've not worked on the dataset in quite some time, but picking it up again I wanted to try to understand more about the different approaches outlined in the User's Guide, so I have been trying ...
written 9 months ago by Maiv0
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Comment: C: Making sense out of makeContrasts and using coefficents for contrasts
... Quick follow-up question to check my understanding; would t<-(T6.SPLD.FW-T6.LD.FW) - ((T5.SPLD.FW-T5.SP) + (T4.SPLD.FW-T4.LD.FW)) / 2 produce an output of genes that are responding to SPLD condition at T6, but not at T5 and T4? ...
written 9 months ago by Maiv0
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Comment: C: Making sense out of makeContrasts and using coefficents for contrasts
... Thanks for replying, I suspected that it might be the case that it was a nonsense contrast since I could not redo it using make contrast. ...
written 9 months ago by Maiv0
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Making sense out of makeContrasts and using coefficents for contrasts
... Hi, I've been trying to redo a contrast using makeContrasts. The contrast was originally made using the coefficients, but I realized I did not really understand what it actually was doing, however I've been unable to recreate the results using the makeContrasts command. design <- model.mat ...
edger contrasts written 9 months ago by Maiv0 • updated 9 months ago by Gordon Smyth39k
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Comment: C: EdgeR -ANOVA-like test vs testing individual contrasts
... Great, thank you for clarifying for me how to think about the tests, appreciate it! ...
written 2.4 years ago by Maiv0
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EdgeR -ANOVA-like test vs testing individual contrasts
... Hi, I'm struggling with finalizing some of my analysis in EdgeR because I'm not sure which is the best approach. I've read many of the posts on similar issues, but still it is not clear to me what would be an optimal approach for me. I'm new to this sort of analysis, and might have missed some clues ...
edger anova contrast t-test written 2.4 years ago by Maiv0 • updated 2.4 years ago by Aaron Lun25k

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