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Limma-Voom - Time series experiment with one group (duplicateCorrelation() function)
voom duplicateCorrelation() timeseries limma
updated 3.3 years ago by 50k • written 3.3 years ago by ▴ 10
0
votes
1
reply
599
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 3.3 years ago by 41k • written 3.3 years ago by ▴ 10
2
votes
3
replies
1.4k
views
RNA-seq: Time-course data normalisation with TPM
rna-seq normalization deseq2 TPM
updated 6.1 years ago by 41k • written 6.1 years ago by ▴ 10
1
vote
1
reply
2.8k
views
goseq: In pcls(G) : initial point very close to some inequality constraints
goseq warning message pwf mgcv
updated 6.6 years ago by ▴ 310 • written 6.7 years ago by ▴ 10
1
vote
3
replies
5.1k
views
DESeq2: How to manually perform filtering and outlier detection?
deseq2 filtering outliers count outliers
updated 6.7 years ago by ★ 13k • written 6.7 years ago by ▴ 10
0
votes
1
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2.1k
views
RUVseq: How to implement to more complex time-course model?
ruvseq deseq2 model.matrix confounders
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by ▴ 10
1
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1
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1.7k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma voom edgeR toptable output
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 10
4
votes
8
replies
2.1k
views
edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
edgeR edger "glmqlftest()" timecourse model
updated 6.7 years ago by ★ 7.9k • written 6.7 years ago by ▴ 10
5
votes
5
replies
2.3k
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edgeR : How to test differential exon expression on case/control study across all time points when accounting for the within subject variability?
egdeR multiple time points model.matrix differential exon usage model
6.7 years ago heikki.sarin ▴ 10
0
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0
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1.2k
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How construct a model for case-control time-course experiment in DEXseq?
dexseq timecourse model.matrix model
6.7 years ago heikki.sarin ▴ 10
0
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1
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1.4k
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Proper dataset form and model for DEXeq analysis
dexseq rna-seq model.matrix model
updated 6.7 years ago by 41k • written 6.7 years ago by ▴ 10
5
votes
27
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3.7k
views
DESeq2 model - How to test case/control time course model when taking account within sample variability?
deseq2 multiple time points time course casecontrol model design
updated 3.3 years ago by 41k • written 6.8 years ago by ▴ 10
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