User: dbouzo

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dbouzo0
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Posts by dbouzo

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How can I use DESeq2 for exploratory analysis after batch effect removal using RUVSeq?
... Hi all, I am conducting some RNA-Seq experiments to determine differentially expressed genes after treatment with various antimicrobials.  I have used RUVSeq to remove a batch effect present in my data set and DESeq2 to estimate differential expression. I used the EDASeq::plotPCA function on the S ...
deseq2 ruvseq rna-seq batch effect written 23 months ago by dbouzo0 • updated 23 months ago by Michael Love25k
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Is my design appropriate for contrast in DESeq2?
... Hi all, I am a microbiology grad student new to bioinformatics, conducting some RNA-Seq experiments to determine differentially expressed genes after antimicrobial treatment. I have an untreated control and 4 different antimicrobial treatments all conducted on the same cell type/microorganism with ...
rnaseq deseq2 design and contrast matrix written 24 months ago by dbouzo0 • updated 24 months ago by Gavin Kelly560

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